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Active learning (AL) is a powerful sequential optimization approach that has shown great promise in the discovery of new materials. However, a major challenge remains the acquisition of the initial data and the development of workflows to generate new data at each iteration. In this study, we demonstrate a significant speedup in an optimization task by reusing a published simulation workflow available for online simulations and its associated data repository, where the results of each workflow run are automatically stored. Both the workflow and its data follow FAIR (findable, accessible, interoperable, and reusable) principles using nanoHUB’s infrastructure. The workflow employs molecular dynamics to calculate the melting temperature of multi-principal component alloys. We leveraged all prior data not only to develop an accurate machine learning model to start the sequential optimization but also to optimize the simulation parameters and accelerate convergence. Prior work showed that finding the alloy composition with the highest melting temperature required testing several alloy compositions, and establishing the melting temperature for each composition took, on average, multiple simulations. By developing a workflow that utilizes the FAIR data in the nanoHUB database, we reduced the number of simulations per composition to one and found the alloy with the lowest melting temperature testing only three compositions. This second optimization, therefore, shows a speedup of 10x as compared to models that do not access the FAIR databases 

Reconstituted cytoskeleton composites have emerged as a valuable model system for studying non-equilibrium soft matter. The faithful capture of the dynamics of these 3D, dense networks calls for optical sectioning, which is often associated with fluorescence confocal microscopes. However, recent developments in light-sheet fluorescence microscopy (LSFM) have established it as a cost-effective and, at times, superior alternative. To make LSFM accessible to cytoskeleton researchers less familiar with optics, we present a step-by-step beginner's guide to building a versatile light-sheet fluorescence microscope from off-the-shelf components. To enable sample mounting with traditional slide samples, this LSFM follows the single-objective lightsheet (SOLS) design, which utilizes a single objective for both the excitation and emission collection. We describe the function of each component of the SOLS in sufficient detail to allow readers to modify the instrumentation and design it to fit their specific needs. Finally, we demonstrate the use of this custom SOLS instrument by visualizing asters in kinesin-driven microtubule networks. 

Abstract BackgroundAlthough genome-wide association studies (GWAS) have successfully located various genetic variants susceptible to Alzheimer’s Disease (AD), it is still unclear how specific variants interact with genes and tissues to elucidate pathologies associated with AD. Summary-data-based Mendelian Randomization (SMR) addresses this problem through an instrumental variable approach that integrates data from independent GWAS and expression quantitative trait locus (eQTL) studies in order to infer a causal effect of gene expression on a trait. ResultsOur study employed the SMR approach to integrate a set of meta-analytic cis-eQTL information from the Genotype-Tissue Expression (GTEx), CommonMind Consortium (CMC), and Religious Orders Study and Rush Memory and Aging Project (ROS/MAP) consortiums with three sets of meta-analysis AD GWAS results. ConclusionsOur analysis identified twelve total gene probes (associated with twelve distinct genes) with a significant association with AD. Four of these genes survived a test of pleiotropy from linkage (the HEIDI test).Three of these genes – RP11-385F7.1, PRSS36, and AC012146.7 – have not yet been reported differentially expressed in the brain in the context of AD, and thus are the novel findings warranting further investigation.