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Creators/Authors contains: "Lee, Brian"

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  1. Free, publicly-accessible full text available November 1, 2026
  2. Active learning (AL) is a powerful sequential optimization approach that has shown great promise in the discovery of new materials. However, a major challenge remains the acquisition of the initial data and the development of workflows to generate new data at each iteration. In this study, we demonstrate a significant speedup in an optimization task by reusing a published simulation workflow available for online simulations and its associated data repository, where the results of each workflow run are automatically stored. Both the workflow and its data follow FAIR (findable, accessible, interoperable, and reusable) principles using nanoHUB’s infrastructure. The workflow employs molecular dynamics to calculate the melting temperature of multi-principal component alloys. We leveraged all prior data not only to develop an accurate machine learning model to start the sequential optimization but also to optimize the simulation parameters and accelerate convergence. Prior work showed that finding the alloy composition with the highest melting temperature required testing several alloy compositions, and establishing the melting temperature for each composition took, on average, multiple simulations. By developing a workflow that utilizes the FAIR data in the nanoHUB database, we reduced the number of simulations per composition to one and found the alloy with the lowest melting temperature testing only three compositions. This second optimization, therefore, shows a speedup of 10x as compared to models that do not access the FAIR databases 
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    Free, publicly-accessible full text available February 12, 2026
  3. Free, publicly-accessible full text available February 5, 2026
  4. Free, publicly-accessible full text available December 16, 2025
  5. Reconstituted cytoskeleton composites have emerged as a valuable model system for studying non-equilibrium soft matter. The faithful capture of the dynamics of these 3D, dense networks calls for optical sectioning, which is often associated with fluorescence confocal microscopes. However, recent developments in light-sheet fluorescence microscopy (LSFM) have established it as a cost-effective and, at times, superior alternative. To make LSFM accessible to cytoskeleton researchers less familiar with optics, we present a step-by-step beginner's guide to building a versatile light-sheet fluorescence microscope from off-the-shelf components. To enable sample mounting with traditional slide samples, this LSFM follows the single-objective lightsheet (SOLS) design, which utilizes a single objective for both the excitation and emission collection. We describe the function of each component of the SOLS in sufficient detail to allow readers to modify the instrumentation and design it to fit their specific needs. Finally, we demonstrate the use of this custom SOLS instrument by visualizing asters in kinesin-driven microtubule networks. 
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  6. Free, publicly-accessible full text available April 10, 2026
  7. ABSTRACT Quantifying ecosystem services provided by mobile species like insectivorous bats remains a challenge, particularly in understanding where and how these services vary over space and time. Bats are known to offer valuable ecosystem services, such as mitigating insect pest damage to crops, reducing pesticide use, and reducing nuisance pest populations. However, determining where bats forage is difficult to monitor. In this study, we use a weather‐radar‐based bat‐monitoring algorithm to estimate bat foraging distributions during the peak season of 2019 in California's Northern Central Valley. This region is characterized by valuable agricultural crops and significant populations of both crop and nuisance pests, including midges, moths, mosquitos, and flies. Our results show that bat activity is high but unevenly distributed, with rice fields experiencing significantly elevated activity compared to other land cover types. Specifically, bat activity over rice fields is 1.5 times higher than over any other land cover class and nearly double that of any other agricultural land cover. While irrigated rice fields may provide abundant prey, wetland and water areas showed less than half the bat activity per hectare compared to rice fields. Controlling for land cover type, we found bat activity significantly associated with higher flying insect abundance, indicating that bats forage in areas where crop and nuisance pests are likely to be found. This study demonstrates the effectiveness of radar‐based bat monitoring in identifying where and when bats provide ecosystem services. 
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